Provart Lab Publications + Patents
 
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Please see my Faculty Page for the most up-to-date listing, through Google Scholar.

Ehlting J, Sauveplane V, Olry A, Ginglinger J, Provart N, Werck-Reichhart D (2008). An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biology 8: 47. [PDF]

Bassel G, Fung P, Chow T, Foong J, Provart N, Cutler S (2008). Elucidating the germination transcriptional program using small molecules. Plant Physiol. 147: 143-155. [PDF]

Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH, Geisler M (2007). A Predicted Interactome for Arabidopsis thaliana. Plant Physiol. 145: 317-329. [PDF]

Brady S, Provart NJ (2007). Extreme breeding: Leveraging genomics for crop improvement. Journal of the Science of Food and Agriculture. 87(6): 925-929. [PDF]

Austin RS, Provart NJ, Cutler SR (2007). C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families. BMC Genomics 8: 191. [PDF]

Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ (2007). An 'Electronic Fluorescent Pictograph' Browser for Exploring and Analyzing Large-Scale Biological Data Sets. PLoS One 2(8): e718. [PDF]

Lan H, Carson R, Provart N, Bonner A (2007). Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. BMC Bioinformatics 8: 358. [PDF]

Ehlting J, Provart NJ, Werck-Reichhart D (2006). Functional annotation of the Arabidopsis P450 superfamily based on large-scale co-expression analysis. Biochem. Soc. Trans. 34(6): 1192-1198. [PDF]

Taylor J, Provart N (2006). CapsID: a web-based tool for developing parsimonious sets of CAPS molecular markers for genotyping. BMC Genetics 7: 27. [PDF]

Toufighi K , Brady SM , Austin R , Ly E , Provart NJ (2005). The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses The Plant Journal 43: 153-163. [PDF]

Nakhamchik A , Zhao Z , Provart NJ , Shiu S-H , Keatley SK , Cameron RK , Goring DR (2004). A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches Plant Cell Physiol 45(12): 1875-1881. [PDF]

Provart NJ , McCourt P (2004). Systems approaches to understanding cell signaling and gene regulation. Curr Opin Plant Biol. 7(5): 605-9. [PDF]

Provart NJ (2004). Developments in Plant and Animal Genome Research. Journal of the Science of Food and Agriculture (JSFA) 84: 473-474. [PDF]

Austin R , Provart NJ , Sacadura NT , Nugent KG , Babu M , Saville BJ (2004). A comparative genomic analysis of ESTs from Ustilago maydis. Funct Integr Genomics 4(4): 207-218. [PDF]

Ilic K , Berleth T , Provart NJ (2004). BlastDigester - a web-based program for efficient CAPS marker design TRENDS in Genetics Vol 20 (7): 280-283. [PDF]

Zhu T , Provart NJ (2003). Transcriptional responses to low temperature and their regulation in Arabidopsis Can. J. Bot. 81: 1168-1174. [PDF]

Provart NJ, Gil P, Chen W, Han B, Chang S, Wang X, Zhu T (2003). Gene Expression Phenotypes of Arabidopsis Associated with Sensitivity to Low Temperatures. Plant Physiol. 132:893-906. [PDF]

Provart N, Zhu T (2003). A Browser-based Functional Classification SuperViewer for Arabidopsis Genomics. Currents in Computational Molecular Biology 2003:271-272. [PDF]

Zhu T, Budworth P, Chen W, Provart N, Chang H-S, Guimil S, Zou G, Wang X (2003). Transcriptional Control of Nutrient Partitioning During Rice Grain Filling. Plant Biotech J. 1:59-70. [PDF]

Chen W, Provart N, Glazebrook J, Katagiri F, Chang H-S, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA, Budworth PR, Tao Y, Xie Z, Chen X, Lam S, Kreps JA, Harper JF, Si-Ammour A, Mauch-Mani B, Heinlein M, Kobayashi K, Hohn T, Dangl JL, Wang X and Zhu T (2002). Expression Profile Matrix of Arabidopsis Transcription Factor Genes implies Their Putative Functions in Response to Environmental Stresses. Plant Cell 14:559-574. [Medline Record]

Becker M, Provart N, Lehmann I, Ulbricht M, Hicke H-G (2002). Polymerization of glucans by enzymatically active membranes. Biotechnol Progress 18:964-968. [Medline Record]

Kopka J, Provart NJ and Müller-Röber B. (1997) Potato Guard Cells respond to drying Soil by a complex Change in the Expression of Genes related to Carbon Metabolism and Turgor Regulation. Plant Journal 11(4):871-882. [Medline Record]

Müller-Röber B, Ellenberg J, Provart N, Willmitzer L, Busch H, Becker D, Dietrich P and Hedrich R. (1995) Cloning and Electrophysiological Analysis of KST1, an inward rectifying K+ Channel Expressed in Potato Guard Cells EMBO J. 14:2409-2416. [Medline Record]

Provart NJ, Majeau N and Coleman JR. (1993) Characterisation of Pea Chloroplastic Carbonic Anhydrase. Expression in Escherichia coli and Site-directed Mutagenesis. Plant Molecular Biology 22:937-943. [Medline Record]

Logan C, Hanks MC, Noble-Topham S, Nallainathan D, Provart N and Joyner AL. (1992) Cloning and Sequence Comparison of the Mouse, Human and Chicken Engrailed Genes Reveal Potential Functional Domains and Regulatory Regions. Developmental Genetics 13(5):345-358. [Medline Record]

Coleman JR, Luinenburg I, Majeau N and Provart N. (1990) Sequence Analysis and Regulation of Expression of a Gene Coding for Carbonic Anhydrase in Chlamydomonas reinhardtii. Canadian Journal of Botany 69:1097-1102.


Su W, Andon N, Haynes P, Briggs SP, Cooper B, Glazebrook J, Goff SA, Katagiri F, Kreps J, Moughamer T, Provart N, Ricke D, Zhu T (2003). New isolated high protein-phenotype-associated plant nucleic acid molecule, useful in plant molecular biology, and specifically for altering protein content or level in plants, and developing molecular markers for plant breeding. International Patent Application WO2003027249-A2.

Kreps J, Briggs SP, Cooper B, Glazebrook J, Goff SA, Katagiri F, Moughamer T, Provart N, Ricke D, Zhu T (2003). New stress-responsive nucleic acid, useful for altering the responsiveness of a plant, e.g. cereal, to an abiotic stress such as cold stress, salt stress or osmotic stress. International Patent Application WO2003008540-A2.

Chen W, Briggs SP, Cooper B, Glazebrrok J, Goff SA, Katagiri F, Kreps J, Moughamer T, Provart N, Ricke D, Zhu T (2003). New plant regulatory nucleic acid encoding a transcription factor, for altering the biological pathway or gene expression in plants, or for the resistance or tolerance of plants to stress (e.g. drought, cold, osmotic or salt stress). . International Patent Application WO2003007699-A2.

Zhu T, Cheng W, Briggs S, Cooper B, Goff SA, Moughamer T, Glazebrook J, Katagiri F, Kreps J, Provart N, Ricke D (2003). New plant genes encoding polypeptides having an activity involved in or associated with the synthesis, metabolism or degradation of carbohydrates in the plant grain useful in generating plants having improved nutritional properties. International Patent Application WO2003000905-A2.

Sessions A, Briggs S, Cooper B, Goff SA, Moughamer T, Glazebrook J, Katagiri F, Kreps J, Provart N, Ricke D, Zhu T (2003). New isolated nucleic acid molecule encoding a polypeptide modulating flower architecture and flowering time, useful in the area of plant biotechnology, and commercial plant farming and agriculture. International Patent Application WO2003000904-A2.

Paszkowski U, Briggs S, Cooper B, Goff SA, Moughamer T, Glazebrook J, Katagiri F, Kreps J, Provart N, Ricke D, Zhu T (2003). New isolated nucleic acids encoding polypeptides that mediate phosphate uptake into plant cells, useful in plant biotechnology, particularly in regulating transport and translocation of phosphorus in photosynthetic plants. International Patent Application WO2003000897-A2.

Glazebrook J, Briggs S, Cooper B, Goff SA, Moughamer T, Katagiri F, Kreps J, Provart N, Ricke D, Zhu T (2003). New polynucleotide comprising a plant nucleotide sequence having an open reading frame that encodes a polypeptide associated with disease resistance, useful for conferring resistance or tolerance to a plant pathogen. International Patent Application WO2003000906-A2.

Provart N, Quanz M, Weißmüller M. (2000) α-1,4-Glucan Chain-containing Polysaccharides and Methods for Producing Same. International Patent WO 00/39321 [Acrobat reader required].

Quanz M, Provart N. (2000) Nucleic Acid Molecules Encoding an Amylosaccharase. International Patent WO 00/14249 [Acrobat reader required].

Bengs H, Jacobasch G, Schmiedl D, Riesmeier J, Quanz M, Bäuerlein M, Provart N. (2000) α-Amylase-resistant Polysaccharides, Production Method, Use Thereof and Food Products containing said Polysaccharides. International Patent WO 00/02926 [Acrobat reader required].

Becker M, Hicke HG, Ulbricht M, Oeckel A, Radosta S, Provart N, Quanz M. (1999) [Immobilisation of Biosynthetic Enzymes on Membrane Surfaces]. DECHEMA Jahrestagung 1999. 17. Jarestagung der Biotechnologen. April 27-29, 1999. Kurzfassung Band I, s. 311.

Quanz M, Provart N, Banasiak R. (1999) Method for Producing Water-Insoluble α-1,4-Glucan. International Patent WO 99/67412 [Acrobat reader required].

Koßmann J, Büttcher V, Welsh T, Provart N. (1995) Nucleic Acid Molecules Encoding an Amylosucrase. [ammended] International Patent WO 95/31553 [Acrobat reader required].